HsaEX0000031 @ hg19
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr12:10167122-10168473:+
Coord C1 exon
chr12:10167122-10167340
Coord A exon
chr12:10167851-10168005
Coord C2 exon
chr12:10168211-10168473
Length
155 bp
Sequences
Splice sites
3' ss Seq
GGGTATAATTTCCTTTTCAGACC
3' ss Score
8.28
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTTTGCAGATATCTAATGACATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCCAGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAG
Seq A exon
ACCACAGATGTAATCCATGTCCTAAGATGTGGCAATGGTACCAAAATAGTTGCTACTATTTTACAACAAATGAGGAGAAAACCTGGGCTAACAGTAGAAAGGACTGCATAGACAAGAACTCCACCCTAGTGAAGATAGACAGTTTGGAAGAAAAG
Seq C2 exon
GATTTTCTTATGTCACAGCCATTACTCATGTTTTCGTTCTTTTGGCTGGGATTATCATGGGACTCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTCTCCATCCTTGTACGTCTCTAACTATTGAGGGTAAACACAAGCTTTCCATGGAATCCTGGGAAAATTAATAATGATTGTGAGAATTATAAATACAGACATAAAAAGAGGAGTACAACATACTGAGAAAAGAGCTCCAGTAACAAATATTGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256660_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(59.8=100),PF113823=DUF3186=PD(66.7=73.0),PF078897=DUF1664=PD(67.7=90.5),PF0208610=MethyltransfD12=PU(52.2=97.3)
A:
PF083915=Ly49=PD(16.4=38.5),PF0208610=MethyltransfD12=FE(37.0=100),PF0005916=Lectin_C=PU(37.5=51.9)
C2:
PF0208610=MethyltransfD12=PD(9.4=28.9),PF0005916=Lectin_C=PD(59.7=95.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCCAACAGCAGCAGG
R:
ACCAACTTCTGCCAGAGGAGT
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)