RnoEX6015299 @ rn6
Exon Skipping
Gene
ENSRNOG00000053638 | Clec12b
Description
C-type lectin domain family 12, member B [Source:RGD Symbol;Acc:1560487]
Coordinates
chr4:163145754-163147046:-
Coord C1 exon
chr4:163146831-163147046
Coord A exon
chr4:163146215-163146369
Coord C2 exon
chr4:163145754-163145869
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGTATGATGTCCTTTTTCAGACC
3' ss Score
7.43
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
TTTTGCAGGTGTCTAATGATATTAACTCTGATTCAGAGAAGTTGAGTGAACTTCAGAAAATCATCCATCCACAGCAGGACAATCTGTCTGAATCACTGAACAACTCCAGAAAGGGTCTTACAGAGGAATCTCTCCAGTCCCAGATCTCTGCCCTCCTGGAGAGGCAGGGGCAGATGGCTACCAAACTCTGCAAGGAATTCCTCATCCATGCTTCTG
Seq A exon
ACCATAAGTGCAATCCTTGTCCCAAGACATGGCAATGGCATGGAAACAGCTGCTACTATTTCTCAGCCAATGAAGAGAAATCCTGGCGTGATAGCAGAAAGGACTGTACGGACAAGAATGCCACGCTGGTGAAGATTGACAGTATTGAAGAAAGG
Seq C2 exon
GATCTCCTTCAGTCACAGCTGTCCCTCACATTCTCTTTCTTTTGGCTGGGATTGTCCTGGGATTCATCTAGCAGAAACTGGCTGTGGGAGGATGGTTCGTTGCCCCCTCCAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053638-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(59.5=100)
A:
PF083915=Ly49=PD(16.5=38.5),PF0005916=Lectin_C=PU(25.7=51.9)
C2:
PF0005916=Lectin_C=FE(36.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCATCCACAGCAGGACA
R:
CATCCTCCCACAGCCAGTTTC
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]