HsaEX0000031 @ hg38
Exon Skipping
Gene
ENSG00000256660 | CLEC12B
Description
C-type lectin domain family 12 member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr12:10014523-10015727:+
Coord C1 exon
chr12:10014523-10014741
Coord A exon
chr12:10015252-10015406
Coord C2 exon
chr12:10015612-10015727
Length
155 bp
Sequences
Splice sites
3' ss Seq
GGGTATAATTTCCTTTTCAGACC
3' ss Score
8.28
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTTTGCAGATATCTAATGACATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCCAGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAG
Seq A exon
ACCACAGATGTAATCCATGTCCTAAGATGTGGCAATGGTACCAAAATAGTTGCTACTATTTTACAACAAATGAGGAGAAAACCTGGGCTAACAGTAGAAAGGACTGCATAGACAAGAACTCCACCCTAGTGAAGATAGACAGTTTGGAAGAAAAG
Seq C2 exon
GATTTTCTTATGTCACAGCCATTACTCATGTTTTCGTTCTTTTGGCTGGGATTATCATGGGACTCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTCTCCATCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256660_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(59.8=100)
A:
PF083915=Ly49=PD(16.4=38.5),PF0005916=Lectin_C=PU(25.7=51.9)
C2:
PF0005916=Lectin_C=PD(59.7=95.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCCAACAGCAGCAGG
R:
ACCAACTTCTGCCAGAGGAGT
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development