BtaEX6024031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002135 | CD69
Description
Bos taurus CD69 molecule (CD69), mRNA. [Source:RefSeq mRNA;Acc:NM_174014]
Coordinates
chr5:100743350-100745296:+
Coord C1 exon
chr5:100743350-100743472
Coord A exon
chr5:100744612-100744811
Coord C2 exon
chr5:100745193-100745296
Length
200 bp
Sequences
Splice sites
3' ss Seq
CACCATTTTTATGTTCACAGTGG
3' ss Score
6.49
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCATGCCACTGGGACTTATTCTGCAACATATCATGAAGGGTCCATTCAAGTTCCTATCCCATGTGCTGTAGTAAACGTGGTCTTCATCACCACTCTCATTATAGCTCTCGTTGCTCTATCAG
Seq A exon
TGGGCCAGTACAACTGTCCAGGACAATATGCATCATCAGCGCCACCAAACACCCATGTGTTTCCATGCTCAGATGATTGGATTGGACACAAGGGGAAATACTACCTTATTTCCAAGAAAACAAAGAACTGGACCTTGGCCCAAAACTTTTGCTCCAAACATGGTGCCACGCTTGCTGTCATTGATTCTAAAGAGGACATG
Seq C2 exon
AACTTTTTAAAACAACATGTGGGTAGAGCTGAACACTGGATCGGGCTGAAAAATGAAGCTGGCCAGACGTGGAAATGGTCAAATGGCCAAGAATTTAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002135-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(28.4=40.3)
C2:
PF0005916=Lectin_C=FE(35.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACTGGGACTTATTCTGC
R:
TTGTTAAATTCTTGGCCATTTGACCA
Band lengths:
220-420
Functional annotations
There are 1 annotated functions for this event
PMID: 9287313
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000125; ELM sequence: NAC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]