RnoEX6015291 @ rn6
Exon Skipping
Gene
ENSRNOG00000056783 | Cd69
Description
Cd69 molecule [Source:RGD Symbol;Acc:61318]
Coordinates
chr4:163043419-163045148:-
Coord C1 exon
chr4:163045026-163045148
Coord A exon
chr4:163043818-163044017
Coord C2 exon
chr4:163043419-163043522
Length
200 bp
Sequences
Splice sites
3' ss Seq
AATGCTCTTCCTGTCCACAGTGG
3' ss Score
9.74
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACCATGGCACCAGTGTACATTTTGAGAAGCATCGTGAAGGATCCATTCAAGTTCCTATCCCTTGTGCTGTGCTCGTAGTGGTCCTCATCACTTCCTTAATTATCGCTCTCTTTGCCTTAAGTG
Seq A exon
TGGGCAAGTACAATTGTCCGGGCTTCTATGAGAATCTGGAGTCATTTGACCACCATGCTGCTTCCTGCAAGAATGAGTGGTTTTCATACAACGGGAAATGTTACTTTTTCTCCACCACAACCAAGACTTGGGCCTTGGCCCAAAAATCTTGTTCTGAAGATGACGCTACCCTTGCTGTTATTGATTCGGAAAAGGACATG
Seq C2 exon
GCGTTTCTGAAGCGATATGCTGGTGGACTGAAACACTGGATTGGGCTGAGAAACGAAGCTAGTCAGACATGGAAATGGGCAAATGGCAAAGAATTTAACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056783-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF151761=LRR19-TM=PU(38.0=90.5)
A:
PF151761=LRR19-TM=PD(61.0=91.0),PF0005916=Lectin_C=PU(28.4=40.3)
C2:
PF0005916=Lectin_C=FE(35.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGCACCAGTGTACATT
R:
TGTTAAATTCTTTGCCATTTGCCCA
Band lengths:
223-423
Functional annotations
There are 1 annotated functions for this event
PMID: 9287313
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000125; ELM sequence: NAC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]