MmuEX6007343 @ mm10
Exon Skipping
Gene
ENSMUSG00000030156 | Cd69
Description
CD69 antigen [Source:MGI Symbol;Acc:MGI:88343]
Coordinates
chr6:129269576-129271457:-
Coord C1 exon
chr6:129271335-129271457
Coord A exon
chr6:129269989-129270188
Coord C2 exon
chr6:129269576-129269679
Length
200 bp
Sequences
Splice sites
3' ss Seq
AATGTCCTTTCTGTCCACAGTGG
3' ss Score
10.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACCATGGCACCAGTATACATTTTGAGAAGCATCATGAAGGATCCATTCAAGTTTCTATCCCTTGGGCTGTGTTAATAGTGGTCCTCATCACGTCCTTAATAATAGCTCTCATTGCCTTAAATG
Seq A exon
TGGGCAAGTACAATTGCCCAGGCTTGTACGAGAAGTTGGAATCATCTGACCACCATGTTGCTACCTGCAAGAATGAGTGGATTTCATACAAGAGGACATGTTACTTCTTCTCCACCACAACCAAGAGTTGGGCCTTGGCCCAACGCTCTTGTTCTGAAGATGCTGCTACTCTTGCTGTAATTGATTCAGAAAAGGACATG
Seq C2 exon
ACGTTTCTGAAGCGATATTCTGGTGAACTGGAACATTGGATTGGGCTGAAAAATGAAGCTAATCAGACATGGAAATGGGCAAATGGCAAAGAATTTAACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030156-'4-3,'4-1,7-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(28.4=40.3)
C2:
PF0005916=Lectin_C=FE(35.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGCACCAGTATACATT
R:
TGTTAAATTCTTTGCCATTTGCCCA
Band lengths:
223-423
Functional annotations
There are 1 annotated functions for this event
PMID: 9287313
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000125; ELM sequence: NAC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types