HsaEX6065126 @ hg19
Exon Skipping
Gene
ENSG00000110848 | CD69
Description
CD69 molecule [Source:HGNC Symbol;Acc:1694]
Coordinates
chr12:9907183-9909015:-
Coord C1 exon
chr12:9908893-9909015
Coord A exon
chr12:9907658-9907857
Coord C2 exon
chr12:9907183-9907286
Length
200 bp
Sequences
Splice sites
3' ss Seq
AAGCATTTTTCTGTTCACAGTGG
3' ss Score
5.72
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATGATGCCACCAGTCCCCATTTCTCAACACGTCATGAAGGGTCCTTCCAAGTTCCTGTCCTGTGTGCTGTAATGAATGTGGTCTTCATCACCATTTTAATCATAGCTCTCATTGCCTTATCAG
Seq A exon
TGGGCCAATACAATTGTCCAGGCCAATACACATTCTCAATGCCATCAGACAGCCATGTTTCTTCATGCTCTGAGGACTGGGTTGGCTACCAGAGGAAATGCTACTTTATTTCTACTGTGAAGAGGAGCTGGACTTCAGCCCAAAATGCTTGTTCTGAACATGGTGCTACTCTTGCTGTCATTGATTCTGAAAAGGACATG
Seq C2 exon
AACTTTCTAAAACGATACGCAGGTAGAGAGGAACACTGGGTTGGACTGAAAAAGGAACCTGGTCACCCATGGAAGTGGTCAAATGGCAAAGAATTTAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110848-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(28.4=40.3)
C2:
PF0005916=Lectin_C=FE(35.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCACCAGTCCCCATTTC
R:
TGTTAAATTCTTTGCCATTTGACCAC
Band lengths:
221-421
Functional annotations
There are 1 annotated functions for this event
PMID: 9287313
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000125; ELM sequence: NAC; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)