BtaEX6024049 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101165278-101169708:+
Coord C1 exon
chr5:101165278-101165407
Coord A exon
chr5:101168547-101168665
Coord C2 exon
chr5:101169657-101169708
Length
119 bp
Sequences
Splice sites
3' ss Seq
TATTTGGGAATGTTTTTCAGGTA
3' ss Score
6.8
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTTTCACTCAACTAGAAGCATCTCAGGATTTTGAGGCAGATATCAGTACCCCTAAAGACAACAGCAGTGAGATTATCCAAGCTTCAGAGAAAAAGACATATGTCTGGACTGTTACTCCTAAGAAGCTGG
Seq A exon
GTAAAGTGAATATCACTGTAGTTGCTGAGTCCAGGCAAAATAGTGCTTGCCCAAATGAAGCACCTGAGAGGCAGAACATGAACTGGAAAGATACTGTGATCAAAAGTCTGTTGGTACAG
Seq C2 exon
CCTGAAGGTATTGAAAAAGAGATGACTCAAAGTTTCCTTATCTGTACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.275 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCAACTAGAAGCATCTCAGGA
R:
GGAAACTTTGAGTCATCTCTTTTTCA
Band lengths:
163-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]