MmuEX6007308 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128554340-128557629:-
Coord C1 exon
chr6:128557500-128557629
Coord A exon
chr6:128555068-128555186
Coord C2 exon
chr6:128554340-128554391
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGCAATATTTTCCAGGTA
3' ss Score
7.01
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGCGTAACACCGACAGTGAAGTCCTCCAGGCTGGAGAACAGAAAACATATGTCTGGACCATTATTCCTAAGACACTGG
Seq A exon
GTAAAGTAAATGTCACTGTAGTGGCTACATCCAAACAGAGCAGGGCTTGCCCAAATGACGCCAGTAAGGAGCAAGATGTCCACTGGAAAGACACTGTCGTCAAAACCATGCTGGTAGAG
Seq C2 exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'38-31,'38-30,40-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTCAGTTAGAAGCATCTGAGA
R:
TTTGGACAGATGAGGAAACTTTGAGT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types