MmuEX6007308 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128504358-128507647:-
Coord C1 exon
chr6:128507518-128507647
Coord A exon
chr6:128505086-128505204
Coord C2 exon
chr6:128504358-128504409
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGCAATATTTTCCAGGTA
3' ss Score
7.01
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
ATTTCTGTTCAGTTAGAAGCATCTGAGAATTATGAAGCAAGCATCAACACCCAGCGTAACACCGACAGTGAAGTCCTCCAGGCTGGAGAACAGAAAACATATGTCTGGACCATTATTCCTAAGACACTGG
Seq A exon
GTAAAGTAAATGTCACTGTAGTGGCTACATCCAAACAGAGCAGGGCTTGCCCAAATGACGCCAGTAAGGAGCAAGATGTCCACTGGAAAGACACTGTCGTCAAAACCATGCTGGTAGAG
Seq C2 exon
GCTGAAGGTATTGAAAAAGAAGCAACTCAAAGTTTCCTCATCTGTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTCAGTTAGAAGCATCTGAGA
R:
TTTGGACAGATGAGGAAACTTTGAGT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: