BtaEX6024099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101339988-101341427:+
Coord C1 exon
chr5:101339988-101340211
Coord A exon
chr5:101340932-101341150
Coord C2 exon
chr5:101341300-101341427
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTCTCACCTGTCTCTTCCAGGAC
3' ss Score
11.85
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATAATACCATCCACTGGACACGACCTCAGAAACCCAGGTTGCTCACGGAGGACATTTACCAACCCAGGGCTCCGTCTGCGGAGGTGGAGATGACGGCCTACGTGATCCTTGCTCACGTCACGGCCCAGCCGGCCCCGAACCCAGAGGACCTCAAACGTGCCACGAGCATCGTGAAGTGGATCTCAAAGCAGCAGAATTGCCAGGGGGGCTTCTCCTCCACCCAG
Seq A exon
GACACAGTGGTAGCTCTCCACGCCTTGTCCAGATACGGAGCAGCCACTTTCACCAGCGCTAGGAAGGCTGCACAGGTGACCATCCAGTCTTCAGGGACATTTTCCACAAAATTCCAAGTGGAAAACAGCAACCGCCTGTTACTACAGCAGGTTTCATTGCCAGAGGTGCCTGGAGAGTACAGCATGTCAGTCACAGGAGAAGGATGTGTTTACCTCCAG
Seq C2 exon
ACATCTTTGAAATACAATATTCTCCCGAAAAAAGATGAGTTCCCATTTGCTTTGGAGGTGCAGACTCTGCCCCAAACTTGTGATGGACCCAAAGCCCACACCAGCTTCCAGATCTCACTGAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'29-37,'29-36,30-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
PF076789=A2M_comp=PD(5.1=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCTCAGAAACCCAGGTTG
R:
GTCCATCACAAGTTTGGGGCA
Band lengths:
292-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]