BtaEX6024535 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104706511-104709744:+
Coord C1 exon
chr5:104706511-104706615
Coord A exon
chr5:104707994-104708199
Coord C2 exon
chr5:104709595-104709744
Length
206 bp
Sequences
Splice sites
3' ss Seq
CACTTTGTGCTGCCCCTCAGTCT
3' ss Score
7.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGTGTGACTTGGTGAGCTGTGACGTGCCCCCGGTGCCTAACTGCGAAGACGGCCTCCAGCCGGTGCTGGCCAATCCTGGCGAGTGCAGACCCAGCTTCACCTGTG
Seq A exon
TCTGCAGGAAGGAGGAATGCCCGAAGGGGTCCCCACCCTCCTGCCCCCCGCACCGGATGCCCGCCCTTCGGAAGACCCGGTGCTGTGACGAGTACGAGTGTGCTTGCAACTGCACCAACTCCACGGTGAGCTGCCCGCTGGGGTACCTGGCCTCCACCATCACCAACGACTGCAGCTGCACCACCACCACCTGCCTCCCCGACAAG
Seq C2 exon
GTGTGCGTCCACCGAGGCACCATCTACCCCGTGGGCCAGTTCTGGGAGGAGGGCTGTGATACCTGCACCTGCACGGATCTGGAGGATGCTGTGATGGGCCTGCGCGTGGCCCAGTGCTCCCAGAAACCCTGCGCGGACATCTGCCGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'48-47,'48-46,49-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(1.4=2.8)
A:
NO
C2:
PF0009313=VWC=PU(75.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACTTGGTGAGCTGTG
R:
GATGTCCGCGCAGGGTTTC
Band lengths:
246-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]