GgaEX6003195 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74362518-74364799:-
Coord C1 exon
chr1:74364695-74364799
Coord A exon
chr1:74364020-74364225
Coord C2 exon
chr1:74362518-74362667
Length
206 bp
Sequences
Splice sites
3' ss Seq
GCTTAATCTTTTTCTGCTAGCTT
3' ss Score
5
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TCTGTGATCTAGTTTCTTGTGATTTGCCTCCTGTCCCTGACTGTGAGTTTGGCCTGCAGCTTGCTCTGACCAATCCTGGAGAATGCAGACCAAACTATACATGTG
Seq A exon
CTTGTAACAGAGAAGCATGCAGTTTAGTTCAAAGACCTTTCTGCCCACCCCATCGGGAGCTGACTGTTAAGAAGACAGAGTGCTGCGATAAATATGAGTGTACTTGCAGCTGCAGTAACTCAACAGTGAGCTGTCCTCTTGGGTATTTATCCAGATCTCTCACCAATGACTGTGGCTGCATATCTACTACTTGTGTTCCAGACATG
Seq C2 exon
GTGTGTGTGCACAACAACATTGTCTATCCCATCGGGAAAACCTGGAAAAATGGTTGCAAGGAATGTTCTTGCACTAGTATGAGAGATGATATTACAGGATTTCAGATGATGGAATGTCATGACAAAATATGTAACACATTCTGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'71-90,'71-89,73-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(1.4=2.8)
A:
NO
C2:
PF0009313=VWC=PU(75.0=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCTAGTTTCTTGTGATTTGCC
R:
CCGAGAGCAGAATGTGTTACA
Band lengths:
253-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]