DreEX6064140 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7251407-7254534:+
Coord C1 exon
chr18:7251407-7251508
Coord A exon
chr18:7254060-7254265
Coord C2 exon
chr18:7254385-7254534
Length
206 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTGCCCTTTCTCAGTGT
3' ss Score
9.74
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
TGTGTGACATAAACTGCAAACGTCCAGATCCTCCTCACTGTGATCACGGACTCAGTGTTGTCCTCACAAACCCAGGAGACTGTCTGCCAGTTTACCAGTGCG
Seq A exon
TGTGCAAAAAGGATCAGTGTCCTGACTCAACAAAACCTTCCTGTCCTGCATACAAGAAGCTGTCGGTGAAAGCATCCGAGTGCTGCGATTCATACCAATGTCTGTGCAATTGTCAAAACATCACCCGCACCTGCCCTCCAGGCTACATCACAAAGACCAGCACCAATGATTGCCAATGCACAGAGGTCACCTGCACGCCTGATAAG
Seq C2 exon
GTGTGTGTGGTGGACGCTGTGGTGTACCAGGTGGGCAGCAGGTGGGAGGAGAAGTGTAAAACTTGCAGATGCACCGAGCAGACGGACGGACAGACCGGCCTGCACATCGCTCAGTGTGTGGACCCCGTCTGCAACCAGATCTGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(1.4=2.9)
A:
NO
C2:
PF0009313=VWC=PU(75.0=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACATAAACTGCAAACGT
R:
CACAGGGCAGATCTGGTTGC
Band lengths:
252-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]