RnoEX6015160 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158198104-158200523:+
Coord C1 exon
chr4:158198104-158198208
Coord A exon
chr4:158199509-158199714
Coord C2 exon
chr4:158200374-158200523
Length
206 bp
Sequences
Splice sites
3' ss Seq
GTCACTTGTATTCACCCCAGCCT
3' ss Score
4.38
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGTGTGACCTGGTCAACTGCAACTTGCCACCAGTGCCTCCGTGTGAAGGAGGACTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
Seq A exon
CCTGCAGGAAAGAAGAGTGCAAAAGAGTGTCCCCACCCTCCTGCCCCCCTCACCGGACACCCACCCTTCGGAAGACCCAGTGCTGTGATGAGTATGAATGCACTTGCAGCTGTGTCAACTCCACGCTGAGCTGCCCACTTGGCTACCTGGCCTCGGCCACCACCAATGACTGTGGCTGCACCACAACCACCTGTCTCCCTGACAAG
Seq C2 exon
GTTTGTGTCCACCGAGGCACCGTCTACCCTGTGGGCCAGTTCTGGGAGGAGGGCTGTGACACATGCACCTGCACCGACATGGAGGATACTGTTGTGGGCCTGCGTGTGGCTCAATGCTCTCAGAAGCCCTGTGAAGACAGCTGTCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'54-47,'54-46,55-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(1.4=2.8)
A:
NO
C2:
PF0009313=VWC=PU(75.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCTGGTCAACTGCAAC
R:
TGGCTGACAGCTGTCTTCACA
Band lengths:
253-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]