BtaEX6024831 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108785368-108786723:-
Coord C1 exon
chr5:108786573-108786723
Coord A exon
chr5:108785721-108785795
Coord C2 exon
chr5:108785368-108785457
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTCTGCCCTCTGCAGTAT
3' ss Score
8.72
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTACATACAAGCCGCCACCTCCCCGAAGGACATCGTGATCGTGGTGGACACAAGCGGCAGCATGAAGGGGCTGCGGATGACCATCGCCAAGCACACGGTCTCCACCATCCTGGACACGCTGGGGGAGAACGACTTCGTGAACATCATCGCG
Seq A exon
TATAATGACTACATCCACTACATCGAACCTTGTTTTAAGGGGATCTTGGTCCAGGCAGATCGGGACAACCGAGAG
Seq C2 exon
CACTTCAAACAGCTGGTGGACGAGTTGATGGTCAAAGGTGTGGGGGTCGTGGACCGAGCCCTCCGTGAAGCCTTCCAGATCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PU(24.7=80.4)
A:
PF137681=VWA_3=FE(14.5=100)
C2:
PF137681=VWA_3=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATACAAGCCGCCACCTC
R:
CGTCCACCAGCTGTTTGAAGT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]