MmuEX6006563 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119268196-119271305:+
Coord C1 exon
chr6:119268196-119268346
Coord A exon
chr6:119270754-119270828
Coord C2 exon
chr6:119271216-119271305
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTACTTGGCTTGCAGTAC
3' ss Score
6.16
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTACATACAAGCTGCCACATCTCCCAAAGACATCGTAATTCTGGTGGACATTAGCGGCAGCATGAAGGGGCTGAGGATGGCTATCGCCAAGCACACCATTACCACCATATTGGACACCCTGGGAGAGAACGACTTCGTGAACATCATCGCG
Seq A exon
TACAATGACTACGTCCACTACATTGAGCCCTGCTTCAAAGGCATCCTTGTCCAAGCAGATCGAGACAACCGAGAG
Seq C2 exon
CATTTCAAGCAGTTGGTGGATGAGCTGATGGTCAAAGGTGTGGGTGTCGTGAGTCAAGCTCTAATTGAAGCTTTCGAGATCCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'11-31,'11-22,12-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PU(24.7=80.4)
A:
PF137681=VWA_3=FE(14.5=100)
C2:
PF137681=VWA_3=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGCCACATCTCCCAAAG
R:
AGCTCATCCACCAACTGCTTG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types