BtaEX6026040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7426069-7437108:-
Coord C1 exon
chr4:7432345-7437108
Coord A exon
chr4:7428821-7430596
Coord C2 exon
chr4:7426069-7426178
Length
1776 bp
Sequences
Splice sites
3' ss Seq
TAAAAAATATATATTTACAGTTT
3' ss Score
4.9
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTTGCAAATGAAGATTACTCCAAAATGATACAAACATTATTTCTTCTTTTGGCTAACAAGAGTTCAACTGATGATATCGCTTTGGTGACTAAAGACATTGCTACCTTTTTGGGTTATCTCAAAAATGTTTCTAGAGAAGGTAATTTTGATGTTGCCCTTCTTACTCGTCTGCTAAGTCAAGAACAGCTAACTAATTTCTCAGTTGTTCAGCTGCTTTTTGAAAGCTTCCTAATTAATTCAGTCAATGACTTAGCTGAGCGTTCTCAAGGAGCAGCCTTGAACTTAAGTGATGCTGACCTTCAAATAATGAATCTCATTAACCTCGTCTTGAACCACACACAGTCAGAAAATGGTGAGAGAGTCGTTTTCCCTCCAAGAAGCAGAATGGGTTTCATGGAACAGCTTTTGAAAACATTCTTCTTTTTACTAAAGGAAAATTCTGGCAAAAAAATATTTCTTCTGCTAAAAGACATCCACAAAGATCTCTTTGCAGAGATGAG
Seq A exon
TTTTGTTCCAAAGGATAAAATTCTAGAAAATCTGAAACTCAATCATTTTCTCACCTCCATGAAAGAAGATAGATTGGTGAGCGCTTTTTCAACTTTAAAGGAGACTGTGTATCATCTAATAAAGAACTCATTTACGTTAGATGATGGAGAATTATATTTTGATAATCATCAAGGACTGCAGCTCCTGGGAGATTTATTCCACACTCTTCTAAGGGAAACATCAATGAAAAACGAGACTGAAAATGATCTGGAGTTTCTTATGGTGCTGAATCAGTTGCTTTCCCATATGAACAGTTCTGAGGACCTTTTCAAGCTCAATCAAGATCTCCGGTCAGCTCTTCACCTCGTGAGAGAAACCTCCATAGTGATAGCACATTTCATGGACACTCTTTTAAGCTCTCCTGTTAAGGACTTCCGTGTGCTGTACCCTTCCCTCCAGGAAGTTATACTTGCAAATCTAACCGATTTGCTTTCCTTTGTAAACAATTCATTCCCCCTAAGGAACAGAGCAACATTAGAAATTACCAGGCACTTACTGGGTGTTATCTCAGGAGCAGGTGGAGGGAACTGTACCCCTGACCCACTCTTGGAGATGTCTGACACTCTGACCATGCTGGCCGACGATGGTGTAGAGATGAAAGGTCTTGCCACGTCAGTCACCTCCACCGTGAAATTTCTTAAGTTAGCCAAGAAAATCGCAAGAAAGGTGGCCACCATGTTTCAAACTCATCTCATTTCCATTGCCAATGACACCATGAAATTCTTTGACACTCTTTATTTTCTTTTGCTACAAAGTGTTCGAAATGTTGTCAATGAAATGATTACTTTAAAAAAGGCAGATCATTTAATATTTGAAAATATAGATGACTTGTTGATGCTATTTCTTGACTTGGCCTTTGGGATGATTGGAGTTAAGCCTAATATTTCCCAAGACTCAGATATCCTCAATATGTCATCTGGCATATTCACATACATGAACCAGTCCAAACATCTTTATGATATTAGGGAAGAAATAGCTGACTTTTTAACTTCTGTGAAAATCAATTTGGGAGACGTGGAACGTCTCCTGGCTGCATTTAAAAATGGGGCCCAAATATTTTCTGTGGATTCTGTCAATTTATGGGAAGAAATCCTTGATTGCTTAGTTCTTATAAATAACATCACCAGCCACATAGACTTCTTATATTCTAACCCAACTTCGACTCATAATTTCCCTCGAGATACAAAATGGGAAATAACTCATGAAGTAATCCTGTTTCTGCGTGAAATCCTGTCCCAAAACAGGACAGAGCTAGGGAGCTACTTGAGAACGGTGATCAACCTCATCTCGGTCACGCTTTGGAATGACACAGGGAAGGACCACAGGGGTGTTTTGAATCTGTTGCTGACATTGGCTCCGCATCCAGATGACCTTCTGAAACTCATCAGGACAGCGGCAGAGGCCTCCTGTGAAGCGTCACTTTTTAACACCTCTTGGATTCAGAACGTGACTGAGCAGCAACTCCAAGAAGCGATCCAGACCCTGCTGAGGAAAATAGCTCTCGTGAAGAAAGAGCTTCTCCTCAACAGCTCTCAGTGGACGCACTCCATGAGCACTTTGCTTCAGCCCTTTTTTGAAATTTTTATTCATGCAACCACTGGAACACATGAGAAGACCCAGAAAGAGCTGGTTGACATTCCCAACATCCTCAAACCATTATCACATTTTGAGAAATACCGGAAGGCATTGATCGCATTGGTTGAATACTGGCAGAGGGTCTCGCTGATTGATCAAAG
Seq C2 exon
TGTCTTGGATACCTGTCAGGCTTTCCTGCAGTCCCCGAAGCCCCCGGATGCTGTGGTGACCCTGTGGAGAATGGAGACGCTGGCCCAGCGCGTGCTCCTCCTCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAATGACTTAGCTGAGCGT
R:
CAGCGTCTCCATTCTCCACAG
Band lengths:
344-2120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]