HsaEX6008227 @ hg19
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]
Coordinates
chr7:48311384-48321049:+
Coord C1 exon
chr7:48311384-48316162
Coord A exon
chr7:48317691-48319517
Coord C2 exon
chr7:48320940-48321049
Length
1827 bp
Sequences
Splice sites
3' ss Seq
ATATATATATATATTTACAGTTT
3' ss Score
5.51
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCAAATGAGGATTACTCCAGAATGATAGAAACATTATTCATTCCTGTGACCAATGAGAGTTCAACTGAAGATATAGCTTTGTTAGCCAAAGCTATTGCTACTTTTTGGGGCTCTTTAAAAAATATATCTAGAGCAGGCAATTTTGATGTTGCCTTTCTTACCCATCTGCTAAATCAAGAACAGCTGACTAATTTCTCAGTTGTTCAGCTGCTTTTTGAAAACATCCTAATTAATTTGATCAATAACTTAGCTGGGAATTCTCAGGAAGCAGCTTGGAACTTAAATGATACTGACCTTCAAATAATGAATTTCATTAACCTTATCTTGAACCATATGCAGTCAGAAACTAGTAGGAAAACAGTTCTCTCTCTGAGAAGCATAGTAGATTTCACAGAACAGTTTTTGAAAACATTCTTCTCCCTTTTTCTAAAGGAAGATTCTGAGAACAAAATATCTCTTCTGCTGAAATATTTCCACAAAGATGTTATTGCAGAGATGAG
Seq A exon
TTTTGTCCCAAAAGATAAAATTCTAGAAATTCTGAAACTGGATCAATTTCTTACCCTGATGATACAAGACAGATTGATGAACATTTTTTCAAGTTTAAAGGAGACTATATATCACCTAATGAAAAGTTCATTTATATTAGACAATGGAGAATTTTATTTTGATACTCATCAAGGACTGAAGTTCATGCAAGATTTATTTAATGCCCTTCTCAGGGAAACTTCAATGAAAAATAAGACTGAAAATAATATAGACTTTTTCACAGTGGTGAGTCAGTTGTTTTTCCATGTGAATAAGTCTGAGGACCTCTTCAAACTCAATCAAGATCTTGGGTCAGCTCTTCACCTTGTAAGAGAATGTTCAACAGAGATGGCAAGACTTCTGGATACAATTTTACACTCTCCTAATAAGGACTTCTATGCTTTGTATCCTACCCTCCAAGAAGTTATACTTGCTAATCTAACGGATTTGCTTTTCTTTATAAATAATTCATTCCCTCTAAGAAACAGAGCAACATTAGAAATTACTAAGAGATTAGTTGGTGCTATTTCAAGAGCAAGTGAAGAAAGTCACGTCCTGAAACCCCTCTTAGAAATGTCTGGGACTCTGGTCATGCTGTTGAATGACAGTGCTGACCTGAGAGATCTTGCCACATCAATGGACTCCATTGTGAAACTTCTTAAGCTGGTCAAGAAAGTTTCGGGGAAGATGTCCACAGTTTTTAAAACTCATTTTATCTCCAATACCAAGGACAGTGTGAAATTCTTTGACACTCTGTATTCCATCATGCAACAAAGTGTTCAAAATCTTGTGAAAGAAATAGCTACTTTAAAAAAAATAGATCATTTCACATTTGAAAAGATAAATGATTTGTTGGTGCCATTTCTTGACTTGGCCTTTGAAATGATTGGGGTAGAACCTTATATATCATCAAACTCTGATATTTTCAGTATGTCACCTAGCATACTCTCATATATGAACCAATCTAAGGACTTTTCTGATATTTTGGAAGAAATTGCTGAATTTTTAACATCTGTGAAAATGAACTTGGAAGATATGAGGAGTCTTGCGGTAGCATTTAACAATGAGACTCAAACATTTTCTATGGATTCTGTCAACTTACGGGAAGAAATTCTGGGTTGCTTAGTTCCTATAAATAACATCACCAACCAAATGGACTTCTTATACCCTAATCCAATTTCCACTCATAGTGGCCCTCAAGATATAAAATGGGAAATAATTCATGAAGTGATCCCTTTTTTGGATAAAATATTATCACAAAACAGCACAGAAATAGGATCTTTCTTGAAAATGGTGATCTGTCTCACCTTAGAAGCTCTTTGGAAAAACTTAAAGAAAGATAATTGGAATGTTTCTAATGTGTTGATGACATTTACTCAGCATCCAAATAACCTTTTGAAAACCATAGAAACAGTTTTAGAGGCCTCCAGTGGAATTAAAAGTGACTATGAAGGTGATTTGAATAAAAGTTTATATTTTGACACACCTTTGAGTCAGAATATAACTCATCATCAACTTGAAAAAGCAATCCATAATGTTTTAAGTAGAATAGCTCTCTGGAGGAAAGGACTTCTGTTTAACAACTCTGAATGGATAACTTCCACAAGAACTTTGTTTCAGCCACTTTTTGAGATTTTCATTAAAGCAACCACCGGAAAGAATGTCACATCAGAAAAAGAAGAGAGAACCAAGAAAGAGATGATTGACTTTCCTTATAGTTTCAAACCATTTTTCTGTTTGGAGAAATACCTGGGAGGATTATTTGTATTGACTAAATACTGGCAACAAATCCCACTAACAGATCAAAG
Seq C2 exon
TGTTGTTGAGATTTGTGAAGTTTTCCAGCAGACTGTGAAGCCCTCAGAAGCCATGGAGATGCTGCAGAAAGTGAAGATGATGGTCGTACGTGTGCTCACCATCGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATTCTCAGGAAGCAGC
R:
AACGATGGTGAGCACACGTAC
Band lengths:
355-2182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)