MmuEX6084034 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9290268-9301369:+
Coord C1 exon
chr11:9290268-9294965
Coord A exon
chr11:9297082-9298884
Coord C2 exon
chr11:9301260-9301369
Length
1803 bp
Sequences
Splice sites
3' ss Seq
TAAAATATGTAAATTTTCAGTTT
3' ss Score
5.15
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTATTGAAGGTTTTCTATTTCTCATAAAACCCTGGCTTCGTGAGTATGAAAATGGAGACTTCTTTAGGTTTATTCAAAGTCTACTCAATGCCGTGGCCAGTGGGAATTCAACTGATGTAAGTAGGTTGGCCAGGGATTTTACTATGTATTTGGGTTATCTCAGAAACCAATCTAGAGAAGGCAATTTTGATGTTGGCTTTTTCAGCCATATGCTAGATCAAGAGCACCTCACTGATCTCCCAGTTGTTCAGCGGCTTCTTGAAAGCATTGTGATGAATTCAGTTAGTAGCTTTGCAGCGCTATCTCAGGAAACGCCTCCCAGTTTCAGCGGCACCAACCTTCAAATAGCAGATCTCATGAATCTCATCTTGAAGCACGCGCAGTCCAAAAACCATGCGGAAGCTGAAGGAAGCACAGAGGATTTCCTGAAGCAGCTTCCAGAGACATTCTTCTCCTCCGTGATAAATGGATTGCATAGCGATGTCACTGCAGAGGTGAG
Seq A exon
TTTTGTCCCTAGAGATAAAATCCTTGAAATTCTGAAACTGGATCCGTTCCTTACCTGGATGAACAAAAACCCATTGATGAACATTTTCTCAGGTCTCAAGACACTATATTATCTGATTAAGAGCTCATTTTCATTAGACAACAGAGAACTCTCTGGAGTCCTGAAGGATTTATCTCACACCCATCCATGGGAGACCACAGTGAAAACTGATGCCGAAGGCCATTTGGATTTCTTTTCAGTAGTGACTCAGTTTCTCTCCCAGGTTAATAGTTCTGAGGACCTCTCCAAATTCAACCAAAATCTCAGGTCTGTTCTCTACCTTGTACAGGAAAGTTCTACAGAAATGGCTACTATTATTGACACTGTCTTACATTCAACTTCTGGGGCCTGCTACTCCCCCTATCCTATGCTTCAGCATAGCACAGTTGCTAAGCTAAGTGACTTGTTTTCTGATGTCAACAGTTCATTCCCTCTAAGAAGCAGAGAAATACTAGAATCAACTATGAGGCTATTTGGCACTATTTCCCAGGTTGGTGAAGAAAGTCATGTCCTGGAGTCAGCCTTAGAAATATTTAGAACTCTGACTATGCTGGTGAATAGCACTGTTGAACTAGGCCATCTTGCCTCAACTGCGGACTCCATGGTTAGACTTCTCAACCTAGCCAAAATTGTTTCAAGAAAGATGGCTACAATGTTGGGAACGCTCTCCATCTCTAGTACTGAGGACTCTGGGAAATTCCTTGACACTTTGTATTCCTTCATGCTACAAAGTGTTCCACATCATGTGAAGCAAATAACTACTTTGAAAAAAGGAGATCCTTTTATAGTTGAAAAGACAAAGGATTTATTGATACCATTTCTTGACTTGGCCTTTGGAATGATTGGAGTCACACCTAATGTATCACAGGACTCTGATGTTTTCAGCATGCCATTTAGCATACTTTCATATATCAACCAATCCAGAGACTTTTCTGAGACTTTGGAAGGAATGGCTGAAAACTTAATTTCTATAAAAATCAGCTTGAGAGATTGGGAGCATTTTGTGGCAATGATTAAAAATAGGACTCAAAATTTCTCTATTGATGCTGCTGACTTATGGGAAGAAATTTTAGGTTGTTTAGTCCCTATAAGTAACATCACAACCCAGATGGACTTCTTGAAGCTTTATGAGCTCTCTTCTACCAGCCATCCTCAGGTCCCGAAACAGGAGAGAACTCATGATGTAATCCGGTATTTGGATGGAATGTTAACAGATAACGGCACAGAAAGAGAGACTTTCTTGAAAATGGTGATTGACCTCACCTTACAAGCTCTTTGGAATGGCTTAAAGGAAGATAACTGGGATATTTTTAATCTCCTGTTGGCATTTGCCCAGCATCCAAATGATCTTTTAAAAGCCATAGAATCAGTTGTAGCGGTCTCTAGTGGAATCCACAGTGACTATCCAGATGATTTCAACCAAGATTCATTTTCTGATTTGTCACTGATTCAGAACACTACTCGTTATCAGCTTGCAAAGGCTGTCCTGATTGGTCTCGGCAAAGCAGGCTTCTCAAGGGAAGGGCTGCCCCTGAACAACACTCAGTGGACACATTTCACACGCACTCTGTTTCACCCAGATTACAACAGTTTTCCTAATTCAACCCCTCATCAGAATGTCACATCAGCAAAGGATGGGAGGACCAAGGATGAAATGATGGTAATTCTTCATGGCTCAGAGCCAATGCCATACCTCCAGAGATTCCTGAAGGCATTATTTGTATCGATTGAGCACTGGCAGGAAGTCCCACAAGCTGAGCAAAG
Seq C2 exon
TGTTTTTGAGATGTGTCAAGTTTTCCAGCAGCTGCAGAAGCCCATGAAAACTGTGAAGATGCTGCAGAGAGTGGAAATGATGGCTCTGCGGGTGCTCATTATCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCCCAGTTGTTCAGCGG
R:
CGCAGAGCCATCATTTCCACT
Band lengths:
356-2159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types