BtaEX6026048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7378485-7395251:-
Coord C1 exon
chr4:7395103-7395251
Coord A exon
chr4:7383592-7383705
Coord C2 exon
chr4:7378485-7378575
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGATGTGCTTTATTTTGCAGGTA
3' ss Score
11.77
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGGTGACAGCACCATTTTGCTTGAAGCTTTATCAGGAAATTCTGCAGTCTCCAAATGGCGCTTTGGTGTGGTCCTTCCTAAAACCTGTATTACATGGAAAGATACTGTATACACCAAACACTCCAGAGATTAATAAAGTCATTCAGAAG
Seq A exon
GTAAATCATACTTTTGATTTTGTGGGCAAGTTGAAGACTTTGTCAGAAACACTGCTGAGTGCGTCCAGCATTTTTCAGAGCAGCGGAAACGGCCAGATGCTCCACCAGCTGCAG
Seq C2 exon
GAAGCCCTGAAAAACAAATTTATAAGAAGCTTTATAAAAAGCCAGCTACACATTGATGTAGGCAAACTGACTGAAAAGCTTCAGATCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATTTTGCTTGAAGCTT
R:
AGCTTTTCAGTCAGTTTGCCT
Band lengths:
221-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]