MmuEX1002856 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9335131-9354916:+
Coord C1 exon
chr11:9335131-9335270
Coord A exon
chr11:9345940-9346053
Coord C2 exon
chr11:9354826-9354916
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGCTCCGCATTGCAGGCT
3' ss Score
8.91
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CACCATTCTGTTTGAAGCTTTATCAGGAAATTCTACAGTCTCCAAATGGTGCACTAGTATGGTCTTTTCTAAAACCTGTATTACATGGAAAAATATTGTATACACCAAACTCTCCAGAGATTAATGAGGTCATTCAAAAG
Seq A exon
GCTAATTATACATTTTACTTTGTGGATAAGATAAAAGTTTTATCGGAAACATTTCTGAAGATATCCAAACTTTTCCAGGGAAGTGGAAATGGTCAAATGTTCAACCAGTTGCAG
Seq C2 exon
GATGCCCTGAGAAACAAATTTATAAGAAACTTTGTAGAGAGCCAGTTGCATATTGACATGGACAAGCTCACTGAAGATCTGCAGACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'35-32,'35-30,37-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(3.5=34.0)
A:
PF126982=ABC2_membrane_3=FE(8.1=100)
C2:
PF126982=ABC2_membrane_3=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTCTGTTTGAAGCTTTATCAGG
R:
TGTCTGCAGATCTTCAGTGAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types