HsaEX6008218 @ hg19
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]
Coordinates
chr7:48356754-48378052:+
Coord C1 exon
chr7:48356754-48356893
Coord A exon
chr7:48375019-48375132
Coord C2 exon
chr7:48377962-48378052
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAATATGCTTCATTTTGCAGGCT
3' ss Score
8.35
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACCGTTTTGCTTGAAGCTTTATCAGGAAATTCTACAATTGCCAAATGGTGCTTTGGTGTGGACCTTCCTAAAACCCATATTGCATGGAAAAATACTATACACACCAAACACTCCAGAAATTAACAAGGTCATTCAAAAG
Seq A exon
GCTAATTACACCTTTTATATTGTGGACAAACTAAAAACTTTATCAGAAACACTGCTGGAAATGTCCAGCCTTTTCCAGAGAAGTGGAAGTGGCCAGATGTTCAACCAGCTGCAG
Seq C2 exon
GAGGCCCTGAGAAACAAATTTGTAAGAAACTTTGTAGAAAACCAGTTGCACATTGATGTAGACAAACTTACTGAAAAACTCCAGACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'29-28,'29-27,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(6.2=61.7)
A:
PF126982=ABC2_membrane_3=FE(7.9=100)
C2:
PF126982=ABC2_membrane_3=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTTTTGCTTGAAGCTTT
R:
CGTATGTCTGGAGTTTTTCAGTAAGT
Band lengths:
231-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)