RnoEX0004758 @ rn6
Exon Skipping
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89523087-89539338:+
Coord C1 exon
chr14:89523087-89523226
Coord A exon
chr14:89534856-89534969
Coord C2 exon
chr14:89539248-89539338
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCATGTGCTTCACATTGCAGGCT
3' ss Score
8.46
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CACCCTTTTGTTTGAAGCTTTATCAGGAAATTCTACAGTCCCCAAATGGTGCCCTGGTATGGTCTTTCCTAAAACCTGTATTACATGGAAAAATATTGTATACACCAAACTCTCCAGAGATTAATGAGGTCATTCAAAAG
Seq A exon
GCTAATTATACGTTTTACTTTGTGGATAAGATAAAAATTTTATCGGAAACATTTCTGAAGATGTCCAGCCTTTTCCAGGAAAGTGGAAATGGCCAAATGTTCAAACAGTTGCAG
Seq C2 exon
GATGCCCTGAGAAACAAATTTATAAGAAACTTTGTAGAGAGCCAGTTGCATATTGACATGGACAAGCTCACTGAAGATCTGCAGACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645-'30-30,'30-29,32-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(2.1=25.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTTTGTTTGAAGCTTTATCAGG
R:
TGTCTGCAGATCTTCAGTGAGC
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]