BtaEX6026338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003773 | SLC25A13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr4:13346898-13382895:-
Coord C1 exon
chr4:13382755-13382895
Coord A exon
chr4:13360491-13360629
Coord C2 exon
chr4:13346898-13347056
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTGCAAACACACAGGGT
3' ss Score
4.91
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCAGGGGGCTCTCAGGTGATTTTCACCAACCCTTTGGAAATTGTCAAGATCCGTTTGCAGGTGGCCGGAGAAATCACCACAGGGCCCCGAGTCAGCGCTCTGTCCGTCGTCAGGGACTTGGGCTTCTTCGGGATCTACAAG
Seq A exon
GGTGCCAAAGCTTGCTTTCTGCGGGACATTCCTTTCTCGGCCATCTACTTCCCGTGCTACGCTCATGTGAAGGCAGCCCTTGCAAACGAAGATGGGCAGATCAGCCCTGGAAGCCTGCTCTTAGCTGGCGCCATAGCCG
Seq C2 exon
GTATGCCTGCAGCCTCACTGGTGACCCCTGCTGATGTCATCAAGACGCGATTACAGGTGGCCGCCCGGGCTGGCCAGACCACTTACAGCGGAGTGATAGATTGCTTTCGGAAGATCCTGCGCGAGGAAGGCCCGAAAGCTTTGTGGAAAGGGGCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003773-'21-28,'21-26,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(50.0=100)
A:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.6=31.9)
C2:
PF0015322=Mito_carr=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGATCCGTTTGCAGGTGG
R:
AGCCCCTTTCCACAAAGCTTT
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]