MmuEX6002875 @ mm10
Exon Skipping
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6042741-6073542:-
Coord C1 exon
chr6:6073402-6073542
Coord A exon
chr6:6052765-6052903
Coord C2 exon
chr6:6042741-6042899
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTGCAAACCCCACAGGGC
3' ss Score
8.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTGGAGGCTCCCAAGTGATTTTCACAAATCCTTTAGAGATTGTGAAAATCCGCTTACAAGTGGCCGGAGAGATCACCACTGGCCCCCGAGTCAGCGCCCTGTCGGTGGTACGAGACCTGGGGTTCTTTGGCATCTACAAG
Seq A exon
GGCGCCAAAGCATGCTTCCTGAGGGACATTCCTTTCTCAGCCATCTACTTCCCGTGCTATGCCCACGTGAAGGCTTCCTTTGCAAATGAAGACGGGCAGGTCAGCCCCGGAAGCCTGCTCTTAGCCGGTGCTATTGCTG
Seq C2 exon
GTATGCCTGCGGCATCTTTAGTGACCCCTGCTGATGTTATCAAGACTAGATTACAGGTGGCTGCCCGGGCTGGCCAAACCACTTACAACGGTGTGACCGACTGCTTCAGAAAGATACTTCGAGAAGAGGGCCCCAAAGCATTGTGGAAAGGAGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-'47-44,'47-42,50-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(50.0=100)
A:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.6=31.9)
C2:
PF0015322=Mito_carr=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGCTCCCAAGTGATTT
R:
TTCTGAAGCAGTCGGTCACAC
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types