GgaEX1053033 @ galGal3
Exon Skipping
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24091716-24106522:-
Coord C1 exon
chr2:24106382-24106522
Coord A exon
chr2:24095514-24095652
Coord C2 exon
chr2:24091716-24091874
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTTTTTCAACACAGGGC
3' ss Score
8.46
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GCTGGAGGTTCTCAAGTGATCTTTACCAACCCACTAGAAATTGTCAAGATTCGATTACAGGTGGCTGGAGAAATTACTACTGGCCCTCGTGTCAGTGCCCTCACTGTACTACGGGACTTAGGCTTCTTTGGTCTCTACAAG
Seq A exon
GGCGCTAAGGCGTGTTTTTTGCGTGACATCCCCTTCTCTGCTATTTACTTCCCCTGTTATGCTCATTTGAAAGCTTCATTTGCCAATGAAGATGGAAGAGTCAGCCCTGGAAATCTGCTCTTGGCTGGGTCAATAGCCG
Seq C2 exon
GTATGCCTGCGGCCTCTCTGGTGACTCCTGCAGATGTCATCAAAACAAGGCTACAGGTAGCAGCCCGGGCAGGACAGACCACTTACAGCGGCGTTGTAGATTGCTTTGTGAAGATCCTTCGAGAGGAAGGTCCAAAGGCTCTGTGGAAAGGAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'23-29,'23-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(50.0=100)
A:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.6=31.9)
C2:
PF0015322=Mito_carr=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTACAGGTGGCTGGAGA
R:
GCTCCTTTCCACAGAGCCTTT
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]