DreEX6074076 @ danRer10
Exon Skipping
Gene
ENSDARG00000099353 | slc25a13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:ZFIN;Acc:ZDB-GENE-080319-2]
Coordinates
chr19:41711261-41724564:-
Coord C1 exon
chr19:41724424-41724564
Coord A exon
chr19:41717418-41717556
Coord C2 exon
chr19:41711261-41711419
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTCTTGGCCCCCAGGGT
3' ss Score
9.59
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCTGGAGGATCTCAGGTGATCTTCACAAACCCTCTGGAGATCGTGAAGATCCGTCTGCAGGTGGCGGGTGAAATCACCACAGGGCCACGCGTCAGTGCTTTCTCTGTCATCCGTGACCTGGGCTTCTTCGGCCTCTACAAG
Seq A exon
GGTGCGAAAGCTTGTTTCCTGAGAGACATTCCCTTCTCTGCCATTTATTTCCCCTGCTACGCACACACCAAGGCGGCCCTGACGGATGAAGACGGGCGAGTGGGACCTGGCAGGCTTTTGCTGGCAGGGGCGCTGGCGG
Seq C2 exon
GCATGCCGGCCGCATCCCTGGTGACCCCAGCTGATGTTATCAAGACGCGGTTACAAGTGGCTGCCCGTGCAGGCCAGACTACATACAATGGACTCATTGACTGTTTCTGGAAGATTCTTCAAGAGGAGGGCCCTCGTGCCTTCTGGAAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099353-'18-20,'18-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(50.0=100)
A:
PF0015322=Mito_carr=PD(32.6=63.8),PF0015322=Mito_carr=PU(15.8=31.9)
C2:
PF0015322=Mito_carr=FE(55.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGATCCGTCTGCAGGTG
R:
CTTTCCAGAAGGCACGAGGG
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]