BtaEX6026622 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30551963-30557743:+
Coord C1 exon
chr4:30551963-30552094
Coord A exon
chr4:30553890-30554050
Coord C2 exon
chr4:30557587-30557743
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGATCAGATGACGTTTTCAGGTC
3' ss Score
4.67
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTCTCAGTTGAATACACTGATTGCACTTCTGCTGGGAGAACTTCTACCTGGAGACAGGCAGAAGATCATGACAATTTGTACCATCGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAG
Seq A exon
GTCGTCACTCCCGAGGCTTTTGCTTGGCTCTCTCAGCTTCGTCACCGGTGGGAGGATACCCAGAAACATTGTCTCGTAAATATCTGCGATGCCCAGTTCCAGTACTTCTATGAATATTTAGGAAACAGCCCTCGACTTGTGATCACTCCTCTGACTGACAG
Seq C2 exon
GTGTTACATTACTTTGACTCAGTCCCTTCATCTCACCATGAGTGGGGCTCCAGCTGGCCCGGCTGGAACAGGAAAAACAGAAACCACCAAAGACCTTGGCCGTGCCCTTGGCATGATGGTTTATGTATTCAACTGTTCAGAGCAAATGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'42-42,'42-41,43-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGATTGCACTTCTGCTGG
R:
ACATAAACCATCATGCCAAGGG
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]