MmuEX6083422 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118060294-118068160:-
Coord C1 exon
chr12:118068029-118068160
Coord A exon
chr12:118063791-118063951
Coord C2 exon
chr12:118060294-118060450
Length
161 bp
Sequences
Splice sites
3' ss Seq
AGACTGTGCAATGATTGTAGGTT
3' ss Score
4.16
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTCACAGCTGAATACACTGATCACACTTCTTCTGGGAGAACTTTCGCCTGGAGACAGGCAGAAGGTCATGACCATCTGCACCATTGATGTCCATGCCAGAGATGTGGTGGCAAAATTGATTTCTCAGAAG
Seq A exon
GTTGTCAGCCCCCATGCTTTTACCTGGCTGTCTCAACTCCGACACGAGTGGGAGGATTCAAGGAAACACTGCGTTGTTAATATTTGTGACGCCCACTTCCAGTACTTCTACGAATACTTGGGAAACAGTCCACGGCTGGTGATCACTCCTCTCACTGACAG
Seq C2 exon
GTGTTACATCACTTTAACTCAATCACTTCATCTGACCATGAGCGGCGCTCCGGCTGGCCCAGCTGGAACAGGGAAAACGGAAACCACCAAAGACCTTGGCCGTGCCCTGGGCATGATGGTTTACGTATTCAACTGCTCAGAGCAAATGGACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'39-39,'39-38,40-39=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(8.2=35.2)
C2:
PF127742=AAA_6=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTTTCGCCTGGAGAC
R:
CCTGTAGTCCATTTGCTCTGAGC
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types