BtaEX6026663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015539 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr4:31020096-31030966:-
Coord C1 exon
chr4:31030879-31030966
Coord A exon
chr4:31025739-31025803
Coord C2 exon
chr4:31020096-31020150
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTTTAATTTTCAGATG
3' ss Score
11.02
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATCCATCCCTGAATCACAAAGCCTACCGAGACGCATTCAAGAAAATGAAGCCACCCAAAATCCCCTTCATGCCGTTATTGCTTAAAG
Seq A exon
ATGTAACGTTCATTCATGAGGGAAATAAAACATTTCTGGATAATCTTGTCAACTTTGAAAAACTG
Seq C2 exon
CACATGATCGCCGACACTGTCCGGACCCTTAGACACTGCAGGACCAACCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015539-'29-40,'29-39,30-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.7=100)
A:
PF0061714=RasGEF=FE(11.4=100)
C2:
PF0061714=RasGEF=PD(0.5=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCATCCCTGAATCACAAAGC
R:
CAAACTGGTTGGTCCTGCAGT
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]