MmuEX6083371 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118982646-118991949:+
Coord C1 exon
chr12:118982646-118982733
Coord A exon
chr12:118986859-118986923
Coord C2 exon
chr12:118991895-118991949
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTTTTTACCTTTCAGATG
3' ss Score
11.11
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATCCTTCCCTAAACCACAAAGCCTACAGGGATGCGTTCAAAAAGATGAAGCCACCAAAAATCCCTTTCATGCCCTTACTGCTTAAAG
Seq A exon
ATGTAACGTTTATTCATGAAGGAAATAAAACATTCTTGGATAATCTCGTCAATTTTGAAAAGCTG
Seq C2 exon
CACATGATTGCAGACACTGTCCGAACCCTGAGACACTGCAGGACTAACCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.7=100)
A:
PF0061714=RasGEF=FE(11.4=100)
C2:
PF0061714=RasGEF=PD(0.5=5.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTTCCCTAAACCACAAAGC
R:
CAAACTGGTTAGTCCTGCAGTGT
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: