BtaEX6026748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33726752-33731045:+
Coord C1 exon
chr4:33726752-33726851
Coord A exon
chr4:33729105-33729294
Coord C2 exon
chr4:33730949-33731045
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTCTGACTTTATTTTCCTAGGGG
3' ss Score
7.83
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CAACCTCAGCAGTGTGGGCTCCTTAATGAATGGTCCCAGCTTTACCTCCAAAGGAACAAAGTACTTCCATTTCTTCAATATCAGTTTATGTGGGCACGAG
Seq A exon
GGGAAGAAGTTGGCTGTCTGTACCAACAATATAACAGACTTTACAGTAAAGGAAATGGTGGCAGGGTCAGATGATTACACGAATTTGGTAGGAGCATTTGTGTGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGTTTCCGAGCAGCCTTATCATCACAATCCATCATTCTGGCAGATACATTTTTGG
Seq C2 exon
GAGTAACAGTTGAAACCACATTGCAAAATATTAATATAAAAGAAGATATGTTCCCAGTTTCACCAAGCCAAATACCAGATGTGCATTTCTTTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'24-24,'24-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGCAGTGTGGGC
R:
TAAAAGAAATGCACATCTGGTATTTG
Band lengths:
194-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]