DreEX6001144 @ danRer10
Exon Skipping
Gene
ENSDARG00000004386 | si:dkey-153k10.9
Description
si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
Coordinates
chr4:9682023-9685103:+
Coord C1 exon
chr4:9682023-9682196
Coord A exon
chr4:9682325-9682514
Coord C2 exon
chr4:9685007-9685103
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTACTCTCGCTGTTATGCAGGGG
3' ss Score
6.57
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGCACTCTGTGTGTTTTAATGACTGCACCTTCTCACACATGGATCAGAACCGAACGTTGAACTATGACTTGAGTGCCTTAAGTTCAGTTGGATCAATCATGAATGGGCCTAGTTTCACCTCCAAGGGAACTAAATATTACCACCAATTTAATATCAGTCTGTGTGGGGCTGAG
Seq A exon
GGGAGGAAGGTGGCAGTGTGCACTGATAACGTCACAGATATGTCCAGCAAGGACCTTCAGAATGAATCCGCTGACCTCAACAATTTTGTCGAGACTTTTGTGTGCCAATCGACCATCATCCCTGCAGATGGACGCGGCTTCAGATCAGCACTGTCATCTCAGTCCATCAGCCTGGCTGACACTTTTCTCG
Seq C2 exon
GAGCGTCTGTTGAAAGCAGTCTGGATGGGGTCACTGTAAACTCAGACCTCTTCCTCAAGTCTTCGCAGAAAGTTCCAGATATCAACTTCTTCTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004386-'16-21,'16-18,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PD(15.7=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGCACCTTCTCACACA
R:
AGTTGATATCTGGAACTTTCTGCGA
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]