GgaEX6000357 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8106376-8114739:+
Coord C1 exon
chr1:8106376-8106549
Coord A exon
chr1:8107555-8107744
Coord C2 exon
chr1:8114643-8114739
Length
190 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTGATTGTTTGCAGGGT
3' ss Score
9.25
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
Seq A exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCAGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
Seq C2 exon
GAGCTACTGTTGAAACAATGCTGGAAAATATCAGTGTCAAGACAGACATGTTCCCTCCCTCTCCAAGCAAAATACCTGATGTGCATTTCTTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PD(15.7=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCGCCTGCTTCAGTG
R:
TTTGCTTGGAGAGGGAGGGAA
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]