BtaEX6026757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33671823-33683533:+
Coord C1 exon
chr4:33671823-33672018
Coord A exon
chr4:33680305-33680452
Coord C2 exon
chr4:33683447-33683533
Length
148 bp
Sequences
Splice sites
3' ss Seq
AAATGGTTTTGTTTCCACAGCTC
3' ss Score
7.97
5' ss Seq
TTTGTAAGG
5' ss Score
3.89
Exon sequences
Seq C1 exon
CTTTCTCCTGTGCTTCTGGGGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGACGAATGGGATGAATTGCCGGCTGGATTTTCCAACGTCGCAACATTCATGGACACTGTGGTCGGCCCTTCTGATAGCAGGCCAGAGGGCTGTAACAA
Seq A exon
CTCTTCTTGGGTCCCTCGTGGAAACTACATAGAGTCCAATCGTGATGACTGCACAGTATCCTTGATCTATGCTGTGCACCTCAAGAAGTCAGGTTATGTCTTCTTTGAGTACCAATATGTGGACAACAACATCTTCTTTGAGTTCTTT
Seq C2 exon
ATTCAGAATGATCAGTGCCAGGAGATGGACACCACCGCTGACAAGTGGGTAAAACTCACAGACAATGGAGAATGGGGCTCTCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCCTGTGCTTCTGGGGA
R:
TTTACCCACTTGTCAGCGGTG
Band lengths:
248-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]