DreEX6064371 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8967126-8971105:+
Coord C1 exon
chr18:8967126-8967315
Coord A exon
chr18:8969554-8969701
Coord C2 exon
chr18:8971016-8971105
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTGTGTGCTTTTAGTGC
3' ss Score
8.5
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CATTCTCCTGCAAGGCGGGGGAGTTTCTGGAGATGTCTGCTCAGGAGTGCACTCAGTGTGCTGCTGGCACTTATTCTCTGGGCAGCGGCCTACGCTTTGATGAGTGGGATGACATTCCTTCTGGATTCAGCAGTCTAGCCACCAACCCTGATAACTCAGCCAATGAAGACAACTCAACCTCCTGCAGCAG
Seq A exon
TGCAAAGTGGGCTGCTCAGGGCTCATATCTGGAATCCAACAGGGATGAGTGTACAGTTTCTCTGATCTACACTGTACACTTGAAGAAGCCGGGCTCAGTGTCCTTTGACTACCAGTATGTGGATAACAGCATCTTCTTTGAGTTCTTT
Seq C2 exon
ATTCAGAACGATCAGTGTCAAGAGATGGACCAGGATTCAAGTAATAAATGGATCAAATTGACCAATCATGGAGAGTGGGGAGCACATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'2-6,'2-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCTGCTCAGGAGTGCAC
R:
ACTATGTGCTCCCCACTCTCC
Band lengths:
249-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]