GgaEX6000364 @ galGal3
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8085964-8089124:+
Coord C1 exon
chr1:8085964-8086159
Coord A exon
chr1:8087171-8087318
Coord C2 exon
chr1:8089038-8089124
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTGTACTTACCAGCTC
3' ss Score
5.52
5' ss Seq
TTCGTAAGG
5' ss Score
5.31
Exon sequences
Seq C1 exon
CTTTCTCCTGTGCCTCTGGCGAGTACTTGGAGATGAAGAACCAGGTGTGCAGCAAATGTGCTGAGGGGACATACTCGCTGGGCAGTGGGATCAAGTTTGATGAATGGGATGAGCTGCCAGCAGGATTTTCCAATGTGGCGACATTCATGGACACAGCAGTGGGCTCAGTTGAGAATAAAGCCAACAGCTGCAACAA
Seq A exon
CTCTTCATGGACACCACGAGGGAATTACATCGAGTCAAACAGGGATGATTGTACAGTTTCCCTCATCTACGCCGTGCACCTGAAGAAGTCCGGTTCTGTCTTCTTTGAATACCAATATATTGACAACAACATCTTCTTTGAATTTTTC
Seq C2 exon
ATACAGAATGACCAGTGCAAAGAGATGGAGTCCACAGCAGACAAATGGGTGAAGCTGACAGACAATGGGGAATGGGGCTCTCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCAGGTGTGCAGCAAA
R:
ATGAGAGCCCCATTCCCCATT
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]