MmuEX6015886 @ mm10
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9399181-9418071:+
Coord C1 exon
chr5:9399181-9399376
Coord A exon
chr5:9410584-9410731
Coord C2 exon
chr5:9417985-9418071
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTTCTGTTTCCACAGCTC
3' ss Score
9.58
5' ss Seq
TTTGTAAGG
5' ss Score
3.89
Exon sequences
Seq C1 exon
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAA
Seq A exon
CTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTT
Seq C2 exon
ATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'1-17,'1-10,11-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGCTTCTGGAGAGTATCT
R:
AGCTTCACCCACTTGTCTGTG
Band lengths:
247-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types