BtaEX6026798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014920 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37294908-37309330:+
Coord C1 exon
chr4:37294908-37295069
Coord A exon
chr4:37305948-37306007
Coord C2 exon
chr4:37309211-37309330
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGCATTATGTTTTATTTCAGATA
3' ss Score
9.29
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GAGCTCTTGGATCTAAACAGAACATCAGTCTTTCATAGCCGTTTTGGATTTCTTAATCTCCAGACAATGCTACTGGATGAATATCAAGAGAGACTCTTCGTGGGAGGCAAGGATCTTGTATATTCCCTCAGCTTAGAACACATCAGCAGTGGCTATAGAGAG
Seq A exon
ATACACTGGCCAAGTACAGCACTAAAAACAGAAGAATGCATAATGAAAGGAAATGATGCC
Seq C2 exon
AGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGAACACATCTACTGACCTGCGGGACAGGAGCGTTTGACCCACTCTGTGCCTTCATCAGAGTTGGATACCATTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=63.0)
A:
PF0140314=Sema=FE(4.3=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTAGAACACATCAGCAGTGG
R:
CTGATGAAGGCACAGAGTGGG
Band lengths:
134-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]