MmuEX6015930 @ mm9
Exon Skipping
Gene
ENSMUSG00000063531 | Sema3e
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:MGI Symbol;Acc:MGI:1340034]
Coordinates
chr5:14143874-14164178:+
Coord C1 exon
chr5:14143874-14144034
Coord A exon
chr5:14162188-14162247
Coord C2 exon
chr5:14164059-14164178
Length
60 bp
Sequences
Splice sites
3' ss Seq
TAAGTTATCTTCAATTTCAGATA
3' ss Score
8.35
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AACTTTTGGAACTGAATAGGACTTCAATATTTCAAAGCCCCCTTGGATTTCTTGATCTCCATACAATGCTGCTGGATGAGTATCAAGAACGGCTCTTTGTGGGAGGCAGAGACCTTGTCTATTCCCTGAACTTGGAACGAGTCAGTGACGGCTACAGAGAG
Seq A exon
ATATACTGGCCGAGCACAGCAGTAAAGGTAGAAGAATGCATAATGAAAGGAAAAGACGCA
Seq C2 exon
AATGAGTGTGCCAATTATATCCGGGTTTTGCATCACTACAACAGGACACACCTTCTGACCTGTGCTACTGGAGCTTTTGATCCACACTGTGCCTTCATCAGAGTCGGGCACCATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063531-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=63.0)
A:
PF0140314=Sema=FE(4.3=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAACGAGTCAGTGACGG
R:
GAATGGTGCCCGACTCTGATG
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: