GgaEX6000392 @ galGal4
Exon Skipping
Gene
ENSGALG00000008509 | SEMA3E
Description
semaphorin-3E precursor [Source:RefSeq peptide;Acc:NP_989573]
Coordinates
chr1:9388247-9400438:+
Coord C1 exon
chr1:9388247-9388408
Coord A exon
chr1:9395025-9395084
Coord C2 exon
chr1:9400319-9400438
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTTTTTTTTTTAGATC
3' ss Score
12.14
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCTCTGGGATTTAAACAGGACGTCAGTCTTTCATAGCCCCATTTGGGTATCTTGGTCTTCATATAATGCTCCTGGATGAATATCAAGAGCGACTGTTCGTGGGAGGAAGAGACCTCTTGTACTCCCTCAGTTTGGATCGAATCAGCAACAACTATCGAGAG
Seq A exon
ATCCATTGGCCTAGTACACCTCTTCAAGCAGAAGAATGCATAATTAAAGGAAGAGATGCT
Seq C2 exon
GATGAATGTGCTAATTATGTCCGTGTCCTTCACCGATACAATAGAACGCATCTTCTGGCTTGTGGAACAGGAGCTTTTGATCCAGTTTGTACGTTTATAAGAGTTGGACATCCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.0=96.9)
A:
PF0140314=Sema=FE(4.3=100)
C2:
PF0140314=Sema=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGTGGGAGGAAGAGACCT
R:
AAAGCTCCTGTTCCACAAGCC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]