RnoEX6012448 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17418848-17440506:-
Coord C1 exon
chr4:17439707-17440506
Coord A exon
chr4:17421824-17421883
Coord C2 exon
chr4:17418848-17418967
Length
60 bp
Sequences
Splice sites
3' ss Seq
TACATTATCTTCCATTTCAGATA
3' ss Score
10.2
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CCAGACAGTAACGTGTGACAGCAACTCACAAAGCATTTATTTCGCATTAGGTAGCTTAAGATTTTAGAGATGACTTAAGAAATATGGAAGAATATGCCTAGGCTATAAGTAAAAAATAGTCCAAATTTATAGAGAGGTGTTGGAGCAGTAGAGTATTAGGAGACCTAGGACAAAATCCATGTGGATACAGAGGACTGACCGGATAATTTTTATTTTCCTTGAGTAATTCAATTTAAGGATTCTTATTTATGGAACAAACATGCTAACTGAGCTTTGAGAAAATCATTATTGGCAGCATTATGTGTTTTTATGTACCTCTTAAACCTCTGTTCATTTCAGAACTCTTGGAACTGAACAGGACGTCAATATTTCAAAGCCCCTTTGGTTTTCTTGATCTCCACACAATGCTGCTGGATGAGTATCAAGAACGGCTCTTTGTGGGAGGCAGAGACCTTGTCTATTCCCTGAACTTGGAACGCGTCAGTGATGGCTACAGAGAG
Seq A exon
ATATACTGGCCTAGCACAGCAGTAAAAGTAGAAGAATGCATAATGAAAGGAAAAGACGCA
Seq C2 exon
AATGAGTGTGCCAATTATGTCCGGGTTTTGCATCACTACAACAGGACACACCTTCTGACCTGTGCTACGGGAGCCTTTGATCCACACTGTGCCTTTATCCGAGTCGGGCACCATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=63.0)
A:
PF0140314=Sema=FE(4.3=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCACACAATGCTGCTGG
R:
ACCCGGACATAATTGGCACAC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]