RnoEX6012449 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17370391-17421883:-
Coord C1 exon
chr4:17421824-17421883
Coord A exon
chr4:17418848-17418967
Coord C2 exon
chr4:17370391-17370484
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGAATCTTTTTTAGAAT
3' ss Score
9.74
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATATACTGGCCTAGCACAGCAGTAAAAGTAGAAGAATGCATAATGAAAGGAAAAGACGCA
Seq A exon
AATGAGTGTGCCAATTATGTCCGGGTTTTGCATCACTACAACAGGACACACCTTCTGACCTGTGCTACGGGAGCCTTTGATCCACACTGTGCCTTTATCCGAGTCGGGCACCATTCAGAG
Seq C2 exon
GACCCCCTGTTTCACCTGGAGTCACACAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAACTCCTCCTTTGTGTCCACACTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTGGCCTAGCACAGCAGT
R:
GTGTGGACACAAAGGAGGAGT
Band lengths:
146-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]