DreEX6064386 @ danRer10
Exon Skipping
Gene
ENSDARG00000017369 | sema3d
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:ZFIN;Acc:ZDB-GENE-990715-2]
Coordinates
chr18:9246143-9248238:+
Coord C1 exon
chr18:9246143-9246205
Coord A exon
chr18:9247905-9248024
Coord C2 exon
chr18:9248145-9248238
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTTCTCTTGCTGCAGACT
3' ss Score
10.56
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
TTGAGCTGGCCTGCTTCGAGAGACAGGGTGGAAATGTGTATACTGGCTGGTAAAAACCCTCTT
Seq A exon
ACTGAATGTGCAAATTTCATACGAGTTTTGCACAGCTATAACCGGACCCATGTTTACGCCTGTGGCACTGGAGCCTTCCATCCTACATGTGCCTTCTTAGAAATTAAAGGTCACAAAGAG
Seq C2 exon
GACCGCTGGCTGCAGCTTCACAGCAACACTATGGAATCTGGCCGAATGAAATGTCCTTTTGATCCTAATCAGCCTTTTGCTTCAGTGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017369-'4-5,'4-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(8.4=100)
C2:
PF0140314=Sema=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTGGCCTGCTTCGAG
R:
GTGAGCACTGAAGCAAAAGGC
Band lengths:
155-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]