HsaEX0057066 @ hg38
Exon Skipping
Gene
ENSG00000153993 | SEMA3D
Description
semaphorin 3D [Source:HGNC Symbol;Acc:HGNC:10726]
Coordinates
chr7:85065424-85081579:-
Coord C1 exon
chr7:85081517-85081579
Coord A exon
chr7:85072962-85073081
Coord C2 exon
chr7:85065424-85065552
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTTGTGCCCAACAGACA
3' ss Score
8.13
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTTATTGGCCTGCTGCAAAGGAACGGGTGGAATTATGTAAATTAGCTGGGAAAGATGCCAAT
Seq A exon
ACAGAATGTGCAAATTTCATCAGAGTACTTCAGCCCTATAACAAAACTCACATATATGTGTGTGGAACTGGAGCATTTCATCCAATATGTGGGTATATTGATCTTGGAGTCTACAAGGAG
Seq C2 exon
ATGAGTACCTCTACTCTGGAACAGCTTCTGATTTCCTTGGCAAAGATACTGCATTCACTCGATCCCTTGGGCCTACTCATGACCACCACTACATCAGAACTGACATTTCAGAGCACTACTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153993_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.6=100)
A:
PF0140314=Sema=FE(22.7=100)
C2:
PF0140314=Sema=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGCCTGCTGCAAAGGAA
R:
CATTGAGCCAGTAGTGCTCTGA
Band lengths:
189-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development