RnoEX0079280 @ rn6
Exon Skipping
Gene
ENSRNOG00000007202 | Sema3d
Description
semaphorin 3D [Source:RGD Symbol;Acc:727939]
Coordinates
chr4:19292230-19309649:-
Coord C1 exon
chr4:19309587-19309649
Coord A exon
chr4:19300242-19300361
Coord C2 exon
chr4:19292230-19292323
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTTGTACCCAATAGACA
3' ss Score
5.63
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTTATTGGCCTGCTGCAAAGGAACGAGTGGAACTATGTAAACTAGCTGGGAAAGATGCCAAT
Seq A exon
ACAGAATGTGCAAATTTCATCCGTGTGCTTCAACCCTACAATAAGACTCATGTTTACGTGTGTGGAACTGGAGCATTTCATCCACTGTGTGGATATATTGATCTTGGAGCCAACAAGGAG
Seq C2 exon
GAACTCATATTTAAACTAGACATGCAGAACCTGGAGTCTGGCAGACTGAAATGTCCCTTTGATCCTCAGCAGCCTTTTGCTTCGGTAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007202-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGGCCTGCTGCAAAGGA
R:
TGTCATTACCGAAGCAAAAGGC
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]