GgaEX1051626 @ galGal3
Exon Skipping
Gene
ENSGALG00000006563 | SEM3D_CHICK
Description
NA
Coordinates
chr1:8964447-8970457:+
Coord C1 exon
chr1:8964447-8964509
Coord A exon
chr1:8966212-8966331
Coord C2 exon
chr1:8970364-8970457
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTCTTTGCAACAGACA
3' ss Score
9.26
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTACTGGCCTGCAGCAAAAGAAAAAATGGAATTATGCAAACTAGCTGGGAAAGATGCCCAT
Seq A exon
ACAGACTGTGCCAATTTTATTAGGGTCCTTCAGCCCTACAACCGAACGCATGTTTATGTCTGTGGCACAGGAGCATTTCACCCTCTCTGTGGATACATTGAACTTGGCACTCACAAAGAG
Seq C2 exon
GAAACAATATTCAGGCTGGATACTCAGAACTTGGAGTCGGGCAGGTTGAAATGCCCTTTCGATCCTCAGCAGCCATTTGCATCGGTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006563-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCCTGCAGCAAAAGAA
R:
CTGCCATCACCGATGCAAATG
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]