DreEX6064408 @ danRer10
Exon Skipping
Gene
ENSDARG00000036571 | sema3e
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:ZFIN;Acc:ZDB-GENE-030131-7864]
Coordinates
chr18:9558560-9576250:+
Coord C1 exon
chr18:9558560-9558619
Coord A exon
chr18:9560318-9560437
Coord C2 exon
chr18:9576154-9576250
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTATGTCTGTCAGCCG
3' ss Score
5.3
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATTGTCTGGTCGAGCTCTCAGGAGCAGGTGGAGGACTGTTTGATGCAGGGCAGAGAGAAG
Seq A exon
CCGGAGTGTGCAAACTACATTAAGCTGGTTCAACATTATAACAGCACTCATCTGCTGGCATGTGGCACTGGAGCCTTCAGTCCTGTGTGTGCTTACATCAGAGTGAGTCGTGGAGCAGAG
Seq C2 exon
CAGGAGCGAGAGTTCAGGTTGGAGTCTGACCACATAGAGAGTGGCAGAGGAAGAGTCCCATTTCATCCCAACAGCCCTTTAGCATCAACCGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036571-'5-6,'5-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCTGGTCGAGCTCTCAG
R:
AGACGGTTGATGCTAAAGGGC
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]