RnoEX0079262 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116359195-116359925:-
Coord C1 exon
chr8:116359863-116359925
Coord A exon
chr8:116359360-116359479
Coord C2 exon
chr8:116359195-116359288
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACCCCCACCTGCCCACCAGACG
3' ss Score
5.98
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGGCCTGGCCCGCCCCTGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACATTGGT
Seq A exon
ACGGAGTGCATGAACTTCGTGAAGCTGTTGCATGCCTACAACCACACCCACCTGCTGGCCTGCGGCACAGGGGCCTTCCACCCCACCTGTGCATTTGTGGAGGTGGGCCACCGGCTGGAG
Seq C2 exon
GAACCCATGCTCCGCCTGGACCTGAGGAAGCTCGAGGATGGCAAGGGAAAGAGTCCATATGACCCAAGGCACCGGGCTGCCTCGGTGCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512-'11-7,'11-6,14-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCCCTGTGGAATGG
R:
CCCGGTGCCTTGGGTCATAT
Band lengths:
130-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]